Proposal for the introduction of extensions - Githubissues

PEtab-dev / PEtab

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

https://petab.readthedocs.io

MIT License

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Proposal for the introduction of extensions #527

Closed FFroehlich closed 2 years ago

FFroehlich commented 2 years ago

This pull request describes a proposal for the extension of PEtab (see #528) that allows changes to the format through extensions. The proposed development and acceptance procedure is described in the changes to development.rst . The other change the documentation to indicate that the PEtab YAML file becomes mandatory.

Required steps for changes to the PEtab specification

[x] Updated format specifications (this PR)
[x] Updated converter (no changes necessary)
[x] Updated validator (no changes necessary)
[x] Updated test suite (no changes necessary)
[x] Updated changelog (this PR)

dweindl commented 2 years ago

Here is a draft for the updated yaml schema to account for extensions that I created some time ago: https://github.com/PEtab-dev/libpetab-python/blob/yaml_schema_for_extensions/petab/petab_schema.yaml

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