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PEtab-dev / PEtab

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
https://petab.readthedocs.io
MIT License
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petab.Problem.create_parameter_df should optionally include local parameters #54

Closed dweindl closed 5 years ago

dweindl commented 5 years ago

Currently only global SBML parameters are included. There should be an option to also include local ones. This is a bit tricky since there can be multiple local parameters with the same name in different reactions. We 'globalize' them by prefixing with reaction id, but this is non-standard.

dweindl commented 5 years ago

Maybe this is not too relevant yet. The easier workaround is simply converting all local parameters to global parameters beforehand.