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PEtab-dev / PEtab

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
https://petab.readthedocs.io
MIT License
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Explicitly exclude SBML local parameters from parameters table #571

Closed dweindl closed 11 months ago

dweindl commented 11 months ago

Clarify that local parameters aren't allowed in the parameters table.

Closes #570

matthiaskoenig commented 11 months ago

Just to comment for anybody wanting to use local parameters. You can easily convert local into global parameters via the libsbml local to global converter: https://sbml.org/software/libsbml/5.18.0/docs/formatted/cpp-api/class_s_b_m_l_local_parameter_converter.html

This is a simple SBML converter you would run over the SBML model to get a new SBML model with global instead of local parameters.