Open yambirj opened 1 week ago
I think this is a problem with your local system rather than a bug with the workflow, because:
OSError: [Errno 16] Device or resource busy: 'matchtmp/tmpvuo7hmjh' -> '0.ipc.zst'
From the Python docs:
This exception is raised when a system function returns a system-related error, including I/O failures such as “file not found” or “disk full” (not for illegal argument types or other incidental errors).
Perhaps there was a temporary problem with the storage system. Does the problem happen consistently if you retry? If you're running on a HPC your system administrators might be able to provide more support.
Description of the bug
Hello! Firstly, thank you for the tool. I used it long time ago, and now tried to install the newest version (v2.0.0-beta.3) using
but faced an error. I tried to remove pgsc_calc from nextflow assets and then run nextflow run pgscatalog/pgsc_calc -profile test,singularity again, but it did not work.
Interestingly, this error appears at every version above v2.0.0-alpha.5 (which also was the only one for which test profile worked without errors). The versions below v2.0.0-alpha.5 seem to have an error with SCORE_REPORT, but I am more interested in the newest version.
Command used and terminal output
Relevant files
nextflow.log
System information
I am working on HPC with: nextflow 24.04.4 singularity 3.11.4