Closed smlmbrt closed 8 months ago
Thanks for looking into this. I've previously ran the pipeline successfully with --run_ancestry on a single sample, so having 1 sample probably is not sufficient in and of itself to cause a failure, but does under certain circumstances (i.e, single sample + some other unknown factor).
Also mentioned here https://github.com/PGScatalog/pgsc_calc/issues/174#issuecomment-1775321744
Thanks for looking into this. I've previously ran the pipeline successfully with --run_ancestry on a single sample, so having 1 sample probably is not sufficient in and of itself to cause a failure, but does under certain circumstances (i.e, single sample + some other unknown factor).
This is helpful to know - I just tried it with one sample and it didn't fail.
This bug might not actually be specific to single-samples (re: https://github.com/PGScatalog/pgsc_calc/issues/177#issuecomment-1804847942)
_Originally posted by @smlmbrt in https://github.com/PGScatalog/pgsc_calc/issues/177#issuecomment-1737035019_
Current fails on the Mann-whitney U test stage when there is only 1 sample