Open mfasold opened 4 months ago
Thanks for the report! This looks like a validation issue with author-submitted data:
$ pgscatalog-download -i PGS002807 -o . # grab original data submitted by author
$ zgrep 101658108 PGS002807.txt.gz
19 101658108 G A 0.0001219005
We'll have a look at the score validation process.
I am not sure if this is a database issue, or due to pgscatalog_utils.
If you download the scoring file of PGS002807
pgscatalog-download -i PGS002807 -o . -b GRCh38
the result contains the line
19 101658108 G A 0.0001219005 Author-reported 19 101658108 True True
However, chromosome 19 in hg38 only has a length of 58617616, leading to problems in downstream analyses.