simpler dep handling + versions

[PhilipDeegan]

Summary by CodeRabbit

• New Features

  • Introduced simplified functions for managing Git repository updates, enhancing the build process for dependencies.
  • Streamlined handling of multiple dependencies (Caliper, cppdict, HighFive, Phlop, pybind, SAMRAI) through a unified update mechanism.

• Bug Fixes

  • Improved maintainability and readability by reducing complex conditional logic in dependency management.

• Documentation

  • Updated comments and documentation to reflect the new streamlined processes for dependency handling.

• Enhancements

  • Enhanced type safety and clarity in file access mode handling within the H5Writer and HighFiveFile classes.

[coderabbitai[bot]]

Walkthrough

## Walkthrough The changes introduce two new functions, `phare_git_get_or_update` and `phare_github_get_or_update`, in the CMake configuration files to streamline the management of Git and GitHub repositories. Existing logic for checking the existence of various dependencies has been replaced with direct calls to these functions, simplifying the process of cloning and updating repositories across multiple CMake files. Additionally, modifications were made to enhance type safety in the `H5Writer` and `HighFiveFile` classes by changing the `flags` parameter to use specific enumeration types. ## Changes | Files | Change Summary | |------------------------------------|----------------------------------------------------------------------------------------------------| | `res/cmake/dep.cmake` | Introduced `phare_git_get_or_update` and `phare_github_get_or_update` functions for repository management. | | `res/cmake/dep/caliper.cmake`, `res/cmake/dep/cppdict.cmake`, `res/cmake/dep/highfive.cmake`, `res/cmake/dep/phlop.cmake`, `res/cmake/dep/pybind.cmake`, `res/cmake/dep/samrai.cmake` | Replaced conditional logic with calls to `phare_github_get_or_update` for managing respective dependencies. | | `src/diagnostic/detail/h5writer.hpp` | Changed `flags` parameter types in `H5Writer` class from `unsigned` to `HiFile::AccessMode`. | | `src/hdf5/detail/h5/h5_file.hpp` | Updated `HighFiveFile` class to use `FileOp` type alias for `flags` parameter instead of `unsigned`. | | `tests/diagnostic/test_diagnostics.hpp` | Modified `Hi5Diagnostic` constructor to use `HiFile::AccessMode` for `flags` instead of `unsigned`. |

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