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PHI-base / PHI5_web_display

PHI5_web_display will allow to display PHI-Canto data
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Incorrect display of host strains in metagenotypes on host gene pages #80

Closed jseager7 closed 1 year ago

jseager7 commented 1 year ago

@jashobanta-mcpl Here's an example for PHIG:348 (gene CEBiP of Triticum aestivum) where the metagenotype display name contains two strains:

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Confusingly, the corresponding pathogen gene page for the LysM gene of Z. tritici (PHIG:344) only has this metagenotype for cv. Cadenza of T. aestivum.

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Based on the latest JSON export, this metagenotype only exists for cv. Cadenza, so it looks like an error that cv. Riband is included here. Maybe this is a side effect of the strain aggregation being applied to the Host section.

I think what we would've expected to see is the annotation just for cv. Cadenza.

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Which probably means that every metagenotype with two strain names on this page is wrong.

To clarify: the aggregation of strains that is being done for the Host section should not affect the display of the metagenotype names.

jseager7 commented 1 year ago

This is fixed for PHIG:348 and I can't see any other examples of the problem on other host gene pages.