PHI-base / canto-docs

User documentation for the PHI-Canto project
MIT License
0 stars 0 forks source link

Check documentation is clear on when to add WT control phenotype annotations #27

Open CuzickA opened 1 year ago

CuzickA commented 1 year ago

For https://github.com/PHI-base/curation/issues/104

If not covered adequately in main Help documentation this may need adding to #10

No need to add WT pathogen or host genotype annotation.

Add WT metagenotype control annotations where possible, to aid interpretation of altered metagenotype annotations.

CuzickA commented 1 year ago

Currently have this https://canto.phi-base.org/docs/genotypes#metagenotype_management image

Note: I don't think we state anywhere that there is 'No need to add WT pathogen or host control genotype annotations.' Some of this would be captured by GO annotations.

I might start up a new section in the Curations tips/ FAQ google Doc in #10 called 'Information not to curate' or similar.

@jseager7, The link in blue here doesn't seem to work in jumping to the correct section image

jseager7 commented 1 year ago

The link in blue here doesn't seem to work in jumping to the correct section.

Thanks. I've fixed this in commit a134c04d8fb59769678456fb41d02fd169be7b06, but I still need to upload the changes to the website.

CuzickA commented 1 year ago

Our new curator Maiara also tried to curate the WT controls during training for chemistry curation. I will add a section to the new FAQ file probably under 'information not to curate'.