search

PHI-base / curation

PHI-base curation
0 stars 0 forks source link

how to capture small RNA in PHI-Canto? #11

Open CuzickA opened 6 years ago

CuzickA commented 6 years ago

Not protein coding, so no UniProt id.

Can look up author given id (or sequence?) at https://www.rnacentral.org/

PHI-base eg PHI:6247 BSR0441 Brucella melitensis https://www.rnacentral.org/search?q=BSR0441 https://www.rnacentral.org/rna/URS0000AB9497/224914

Can this RNA central id be handled by PHI-Canto? @ValWood thought it could.

CuzickA commented 6 years ago

do we also want to record the mRNA targeted for silencing?

mah11 commented 6 years ago

Probably yes - in PomBase we would put a targeted RNA ID in an extension.

CuzickA commented 4 years ago

Just to note - this came up again in the recent SAB meeting.

CuzickA commented 2 years ago

Just to note, @JonMWilkes has identified some P. aeruginosa groups working on small RNA which we could reach out to in the future for community curation.