review 'pathogen host interaction immune system process phenotype' terms

[CuzickA]

Under PHI cell level phenotype

@ValWood query what to do with 'effector phenotype' (unused as using new GO terms) and child terms. These children have alternative parents and have just been grouped under effector as suggested in #75

I will work on the other terms for now.

[CuzickA]

PHIPO:0001116 pathogen host interaction immune system signaling pathway phenotype change to pathogen induced host immune system signaling pathway phenotype

edit def from A pathogen host interaction phenotype that affects an immune system signaling pathway in either a pathogen or host cell during a pathogen host interaction. to A pathogen host interaction phenotype that affects a host immune system signaling pathway during pathogen infection.

04423c1

further edit to term name 46cfa14 pathogen modulation of host immune system signaling pathway phenotype and move under 'pathogen modulation of host process phenotype' pathogen modulation of host immune system signaling pathway phenotype

[CuzickA]

(term unused) PHIPO:0001117 host immune signalling pathway activated by pathogen edit 'signalling' to 'signaling' edit def from A cell signaling pathway phenotype where the host immune signaling pathway is induced by a pathogen. to A pathogen host interaction phenotype, in which the host immune signaling pathway is induced by a pathogen.

NTR: host immune signaling pathway suppressed by pathogen

0e773f0

[CuzickA]

231

PHIPO:0001128 pathogen suppression of host PTI change to pathogen suppression of host PAMP-triggered immunity

PHIPO:0001145 pathogen suppression of host ETI change to pathogen suppression of host effector triggered immunity

PHIPO:0001129 abolished pathogen suppression of host PTI to abolished pathogen suppression of host PAMP-triggered immunity

PHIPO:0001141 host ETI signalling induced HR activated by pathogen to host effector triggered immunity signaling induced hypersensitive response activated by pathogen

PHIPO:0001140 host PTI signaling activated by pathogen to host PAMP-triggered immunity signaling activated by pathogen

b5946eb

[CuzickA]

PHIPO:0001168 inhibition of host immune response protease present term used in https://canto.phi-base.org/curs/babb18b437174938/ro/

move term under 'pathogen modulation of host process phenotype'

change term label to (this could still be improved) presence of pathogen inhibition of host immune response protease

change def from A phenotype where the host immune response protease activity is inhibited by the pathogen. to A pathogen host interaction phenotype, in which the host immune response protease activity is inhibited by the pathogen.

834fc91

[CuzickA]

(term unused) PHIPO:0001167 pathogen host interaction immune system process phenotype useful grouping term change label to (currently only used for host immune terms, not pathogen) pathogen modulation of host immune system process phenotype

def A pathogen host interaction phenotype that affects an immune system process in either a pathogen or host cell during a pathogen host interaction (GO:0002376). change to A pathogen host interaction phenotype that affects a host immune system process during pathogen infection (GO:0002376).

move under 'pathogen modulation of host process phenotype'

6ea932f

[CuzickA]

This branch under PHI cell level now looks like this

1) query what to do with 'effector phenotype' 2) some text defs still need looking through and updating

[ValWood]

I would probably obsolete "effector phenotype" and add it as a related synonym to any branch which is an effector phenotype....

[CuzickA]

Closing this ticket for now