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Pathogen-Host Interaction Phenotype Ontology
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NTR: Response to stress (and re-structure) #292

Closed CuzickA closed 3 years ago

CuzickA commented 3 years ago

See #290

CuzickA commented 3 years ago

NTR: Response to stress phenotype PHIPO:0001217 3a667da

Move below terms under this new parent 0120cd3 image

Next: update term definitions

CuzickA commented 3 years ago

PHIPO:0001217 Response to stress phenotype -> stress phenotype (response suggests change and some phenotypes under here may indicate no change) old def A single species phenotype that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). new def A growth phenotype which describes the sensitivity, resistance or absence of change of individuals or populations after exposure to a specific stress.

PHIPO:0001096 resistance to stress old def A single species phenotype in which cells in a population show decreased sensitivity to a stress. Typically, a cell population are deemed resistant to a stress if cells in the population grow and divide when exposed to the stress at an intensity at which wild-type cells stop growing (and may die). new def A growth phenotype which describes the resistance of individuals or populations after exposure to a specific stress. Typically, individuals or populations are deemed resistant to a stress if they grow when exposed to the stress at an intensity at which an individual or population of wild type cell(s) stop growing (and may die).

PHIPO:0001097 resistance to cell wall stress old def A single species phenotype in which cells in a population show decreased sensitivity to cell wall stress. new def A growth phenotype which describes the resistance of individuals or populations after exposure to a cell wall stress. Typically, individuals or populations are deemed resistant to a stress if they grow when exposed to the stress at an intensity at which an individual or population of wild type cell(s) stop growing (and may die).

PHIPO:0001098 Sensitive to stress old def A single organism phenotype in which cells in a population show increased sensitivity to a stress. Typically, a cell population are deemed sensitive to a stress if cells in the population stop growing (and may die) when exposed to the stress at an intensity that allows a population of wild type cells to grow and divide. new def A growth phenotype which describes the sensitivity of individuals or populations after exposure to a specific stress. Typically, individuals or populations are deemed sensitive to a stress if they stop growing (and may die) when exposed to the stress at an intensity that allows an individual or population of wild type cell(s) to grow and divide.

PHIPO:0001074 sensitive to iron ion starvation old def A population growth phenotype which cells show increased sensitivity to iron ion starvation. new def A growth phenotype which describes the sensitivity of individuals or populations after exposure to iron ion starvation. Typically, individuals or populations are deemed sensitive to a stress if they stop growing (and may die) when exposed to the stress at an intensity that allows an individual or population of wild type cell(s) to grow and divide.

974657a

CuzickA commented 3 years ago

Merge PHIPO:0001073 sensitive to stress during growth Into PHIPO:0001098 sensitive to stress (currently only recording affect on growth under here, so additional parent redundant) 6a76c79

CuzickA commented 3 years ago

image

Now looks like this

Closing ticket