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Pathogen-Host Interaction Phenotype Ontology
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NTRs for PHIPO_EXT to cover plant Necrotrophic effectors and host susceptibility locus #305

Closed CuzickA closed 3 years ago

CuzickA commented 3 years ago

Required for #https://github.com/PHI-base/curation/issues/91 Created using the PHIPO_EXT term creator spreadsheet

Definitions may need refining in the future

Incompatible interaction, recognisable pathogen necrotrophic effector present, host susceptibility locus compromised A pathogen host interaction phenotype where the inverse gene-for-gene relationship between the pathogen and plant host results in disease resistance. The ability of a pathogen necrotrophic effector to be recognized by a specific host susceptibility locus is present. The ability of a host to be susceptible to a pathogen, via the recognition of a pathogen necrotrophic effector by a specific host susceptibility locus, is abolished (susceptibility was present and is now absent).

Compatible interaction, recognisable pathogen necrotrophic effector present, functional host susceptibility locus present A pathogen host interaction phenotype where the inverse gene-for-gene relationship between the pathogen and plant host results in disease susceptibility. The ability of a pathogen necrotrophic effector to be recognized by a specific host susceptibility locus is present. The ability of a host to be susceptible to a pathogen, via the recognition of a pathogen necrotrophic effector by a specific host susceptibility locus, is present.

Incompatible interaction, pathogen necrotrophic effector present, host susceptibility locus absent A pathogen host interaction phenotype where the inverse gene-for-gene relationship between the pathogen and plant host results in disease resistance. The ability of a pathogen necrotrophic effector to be recognized by a specific host susceptibility locus is present. The ability of a host to be susceptible to a pathogen, via the recognition of a pathogen necrotrophic effector by a specific host susceptibility locus, is absent.

Compatible interaction, pathogen necrotrophic effector present, gain of host susceptibility locus A pathogen host interaction phenotype where the inverse gene-for-gene relationship between the pathogen and plant host results in disease susceptibility. The ability of a pathogen necrotrophic effector to be recognized by a specific host susceptibility locus is present. The ability of a host to be susceptible to a pathogen, via the recognition of a pathogen necrotrophic effector by a specific host susceptibility locus, is acquired (susceptibility was absent and is now present).

CuzickA commented 3 years ago

Terms added using PHIPO_EXT term creator Closing ticket.