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Pathogen-Host Interaction Phenotype Ontology
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NTR decreased/increased reducing sugar level in apoplast #311

Closed ValWood closed 3 years ago

ValWood commented 3 years ago

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decreased reducing sugar level in apoplast increased reducing sugar level in apoplast standard def

Suggested parent term (Increased/decreased substance level) (I was looking for this term to use as a place holder, is it 'do not annotate'? If so we might need to let this one be annotate-able for a while until we have the subclasses that we need)

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CuzickA commented 3 years ago

@ValWood which paper is this NTR for?

Do you mean parent term 'level of pathogen substance within host phenotype' or 'pathogen-induced host substance level phenotype' within PHI-branch or host only phenotype under single species parent 'altered level of substance in cell'?

ValWood commented 3 years ago

. I guess we could assume that is is sugars derived from host cell wall although it isn't specified.

PMID:28082413

CuzickA commented 3 years ago

@ValWood is this what you had in mind?

Parent 'pathogen-induced host substance level phenotype' within PHI-branch

NTRs decreased level of host reducing sugar induced by pathogen
def: A pathogen host interaction phenotype, in which the level of host produced reducing sugars usually present during infection is lower than normal.

increased level of host reducing sugar induced by pathogen A pathogen host interaction phenotype, in which the level of host produced reducing sugars usually present during infection is higher than normal.

Should 'apoplast' be in the term name?

ValWood commented 3 years ago

That sounds OK.

I think we need to include "apoplast" here because they specifically assayed the apoplastic fluid, not total cellullar reducing sugars (I'm assuming there are pool of reducing sugars in the cell as a result of carbohydrate catabolism).

CuzickA commented 3 years ago

Updated to include 'apoplast'

NTRs decreased level of host reducing sugar in apoplast induced by pathogen def: A pathogen host interaction phenotype, in which the level of host produced reducing sugars usually present in the apoplast during infection is lower than normal.

increased level of host reducing sugar in apoplast induced by pathogen A pathogen host interaction phenotype, in which the level of host produced reducing sugars usually present in the apoplast during infection is higher than normal.

CuzickA commented 3 years ago

c89a2b5 Terms created, should be loaded tomorrow.