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Pathogen-Host Interaction Phenotype Ontology
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NTRs for 'host hemorrhage with pathogen present' and 'increased host hemorrhage with pathogen' #364

Closed CuzickA closed 2 years ago

CuzickA commented 2 years ago

For https://github.com/PHI-base/curation/issues/102

Preferred term label

host hemorrhage with pathogen present

Textual definition

A pathogen host interaction phenotype in which host bleeding occurs during pathogen infection (MP:0001914 hemorrhage).

Synonyms

host bleeding with pathogen present

host haemorrhage with pathogen present

Suggested parent term

??

@ValWood, I'm not sure what 'type' of phenotype this? Could it go under 'pathogen modulation of host immune system process phenotype'?

image

or is it more of a 'host defense-induced substance level phenotype'? image

or something else??

CuzickA commented 2 years ago

Preferred term label

increased host hemorrhage with pathogen

Textual definition

A pathogen host interaction phenotype in which the host bleeding during pathogen infection occurs to a greater extent than normal (MP:0001914 hemorrhage).

Synonyms

increased host bleeding with pathogen

increased host haemorrhage with pathogen

Suggested parent term

Not sure yet, see comment above

ValWood commented 2 years ago

I would put it under the parent , or make a term "pathogen modulation of host physiological process"

(the phrase 'modulation' is a bit odd. I can't immediately think of a better one, but it isn't really 'modulation' or even just "host physiological process affected by pathogen"

CuzickA commented 2 years ago

Thanks @ValWood . It looks like some words are missing in your comment above. Do you mean

-pathogen modulation of host process

--NTR: host physiological process affected by pathogen (sibling of 'pathogen modulation of host immune system process phenotype')

---NTR: host hemorrhage with pathogen present

ValWood commented 2 years ago

Yes something like that.

CuzickA commented 2 years ago

NTR: host physiological process affected by pathogen phenotype

Def: A pathogen host interaction phenotype, in which a pathogen effects a change in the physiological processes of its host organism.

38b4ad8

Do we need to define 'physiological process'?

CuzickA commented 2 years ago

NTR: host hemorrhage with pathogen present 880dabd

NTR: increased host hemorrhage with pathogen 12f21a4

Now looks like this

image