R package with advanced diagnostics to evaluate a Stock Synthesis model. Diagnostics include residual analyses, hindcasting and cross-validation techniques, and retrospective analyses.
SSplotModelComp, SSplotEnsemble, SSplotHCXval, SSplotJABBAres, SSplotRetro, SSplotRunsTest has the xlim parameter, but it is documented differently.
xlim SSplot parameters
SSplotModelComp
xlim = "default"
@param xlim Optional, values for x-axis range of years to display on plot. Default = "default" displays all years of available data. (currently not used)
SSplotEnsemble
xlim = NULL
@param xlim Optional, years to use for x-axis. Default NULL uses all years available.
SSplotHCXval
xlim = "default"
@param xlim Optional, values for x-axis range of years to display on plot. Default = "default" displays all years of available data. (currently not in use)
SSplotJABBAres
xlim = "default"
@param xlim Optional, values for x-axis range of years to display on plot.
SSplotRetro
xlim = NULL
@param xlim optional xlim, which overwrites xmin
SSplotRunsTest
xlim = "default"
@param xlim Optional, values for x-axis range of years to display on plot. Default = "default" displays all years of available data.
The different methods used in each SSplot vary the usage of xlim. Some of the functions do not implement the parameter. #69
ylim SSplot parameters
ylim documentation is similar, but limited to a set of SSplots
SSplotJABBAres and SSplotRunsTest lists the ylim parameter and sets it to "default"
SSplotJABBAres: @param ylim Optional, min and max values for the ylim to override the "default" value (-0.7, 0.5)
SSplotRunsTest: @param ylim Optional, values for y-axis range to display on plot. Default = "default" will range from -1 to 1.
SSplotRetro and SSplotHCXval lists the ylim parameter and sets it to NULL.
SSplotRetro: @param ylim option to specify ylim range
SSplotHCXval: @param ylim will over-write ylimAdj if specified
SSplotModelcomp and SSplotEnsemble do not list ylim as an parameter. It is defined within the function
SSplotModelComp
,SSplotEnsemble
,SSplotHCXval
,SSplotJABBAres
,SSplotRetro
,SSplotRunsTest
has thexlim
parameter, but it is documented differently.xlim SSplot parameters
xlim = "default"
@param xlim Optional, values for x-axis range of years to display on plot. Default = "default" displays all years of available data. (currently not used)
xlim = NULL
@param xlim Optional, years to use for x-axis. Default NULL uses all years available.
xlim = "default"
@param xlim Optional, values for x-axis range of years to display on plot. Default = "default" displays all years of available data. (currently not in use)
xlim = "default"
@param xlim Optional, values for x-axis range of years to display on plot.
xlim = NULL
@param xlim optional xlim, which overwrites xmin
xlim = "default"
@param xlim Optional, values for x-axis range of years to display on plot. Default = "default" displays all years of available data.
The different methods used in each SSplot vary the usage of
xlim
. Some of the functions do not implement the parameter. #69ylim SSplot parameters
ylim
documentation is similar, but limited to a set of SSplotsSSplotJABBAres
andSSplotRunsTest
lists theylim
parameter and sets it to "default"@param ylim Optional, min and max values for the ylim to override the "default" value (-0.7, 0.5)
@param ylim Optional, values for y-axis range to display on plot. Default = "default" will range from -1 to 1.
SSplotRetro
andSSplotHCXval
lists theylim
parameter and sets it to NULL.SSplotRetro
:@param ylim option to specify ylim range
SSplotHCXval
:@param ylim will over-write ylimAdj if specified
SSplotModelcomp
andSSplotEnsemble
do not listylim
as an parameter. It is defined within the function