PIK-ICoNe / SyntheticNetworks-python

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Bump python-igraph from 0.9.0 to 0.10.1 #35

Closed dependabot[bot] closed 2 years ago

dependabot[bot] commented 2 years ago

Bumps python-igraph from 0.9.0 to 0.10.1.

Release notes

Sourced from python-igraph's releases.

igraph 0.10.1

Added

  • Added Graph.minimum_cycle_basis() and Graph.fundamental_cycles()
  • Graph.average_path_length() now supports edge weights.

Fixed

  • Restored missing exports from igraph.__all__ that used to be in the main igraph package before 0.10.0.

igraph 0.10.0

Added

  • More robust support for Matplotlib and initial support for plotly as graph plotting backends, controlled by a configuration option. See PR #425 for more details.

  • Added support for additional ways to construct a graph, such as from a dictionary of dictionaries, and to export a graph object back to those data structures. See PR #434 for more details.

  • Graph.list_triangles() lists all triangles in a graph.

  • Graph.reverse_edges() reverses some or all edges of a graph.

  • Graph.Degree_Sequence() now supports the "no_multiple_uniform" generation method, which generates simple graphs, sampled uniformly, using rejection sampling.

  • Graph.Lattice() now supports per-dimension periodicity control.

  • Graph.get_adjacency() now allows the user to specify whether loop edges should be counted once or twice, or not at all.

  • Graph.get_laplacian() now supports left-, right- and symmetric normalization.

Changed

  • The C core of igraph was updated to version 0.10.0.

  • We now publish abi3 wheels on PyPI from CPython 3.9 onwards, making it possible to use an already-built Python wheel with newer minor Python releases (and also reducing the number of wheels we actually need to publish). Releases for CPython 3.7 and 3.8 still use version-specific wheels because the code of the C part of the extension contains conditional macros for CPython 3.7 and 3.8.

  • Changed default value of the use_vids=... argument of Graph.DataFrame() to True, thanks to @​fwitter.

  • Graph.Degree_Sequence() now accepts all sorts of sequences as inputs, not only lists.

Fixed

  • The Matplotlib backend now allows edge_color and edge_width to be set on an edge-by-edge basis.

Removed

  • Dropped support for Python 3.6.

  • Removed deprecated UbiGraphDrawer.

... (truncated)

Changelog

Sourced from python-igraph's changelog.

[0.10.1] - 2022-09-12

Added

  • Added Graph.minimum_cycle_basis() and Graph.fundamental_cycles()

  • Graph.average_path_length() now supports edge weights.

Fixed

  • Restored missing exports from igraph.__all__ that used to be in the main igraph package before 0.10.0.

[0.10.0] - 2022-09-05

Added

  • More robust support for Matplotlib and initial support for plotly as graph plotting backends, controlled by a configuration option. See PR #425 for more details.

  • Added support for additional ways to construct a graph, such as from a dictionary of dictionaries, and to export a graph object back to those data structures. See PR #434 for more details.

  • Graph.list_triangles() lists all triangles in a graph.

  • Graph.reverse_edges() reverses some or all edges of a graph.

  • Graph.Degree_Sequence() now supports the "no_multiple_uniform" generation method, which generates simple graphs, sampled uniformly, using rejection sampling.

  • Graph.Lattice() now supports per-dimension periodicity control.

  • Graph.get_adjacency() now allows the user to specify whether loop edges should be counted once or twice, or not at all.

  • Graph.get_laplacian() now supports left-, right- and symmetric normalization.

  • Graph.modularity() now supports setting the resolution with the resolution=... parameter.

Changed

  • The C core of igraph was updated to version 0.10.0.

  • We now publish abi3 wheels on PyPI from CPython 3.9 onwards, making it possible to use an already-built Python wheel with newer minor Python

... (truncated)

Commits
  • c3df47e chore: trigger build
  • 70d66c4 chore: updated changelog [ci skip]
  • a30ca7c refactor: finalized error checking improviements in attributes.c
  • ecfebc0 refactor: more cleanup in attribute handling code [WIP]
  • 1d5a310 refactor: simplifying attribute handler code and improving resilience to erro...
  • 562c05f feat: Graph.average_path_length() now supports weights
  • 742d3b5 chore: updated changelog [ci skip]
  • d0e9078 feat: added Graph.minimum_cycle_basis() and Graph.fundamental_cycles()
  • 3db29fc networkx g.nodes is not a list but is iterable (#567)
  • 47501ad fix: remove unneeded unrolling of dict.items() in several parts of the code
  • Additional commits viewable in compare view


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dependabot[bot] commented 2 years ago

Superseded by #38.