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PKU-DAIR / open-box

Generalized and Efficient Blackbox Optimization System
https://open-box.readthedocs.io
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关于可视化网页的问题 #67

Closed yybnb closed 11 months ago

yybnb commented 1 year ago

作者您好，我在优化中设置了网页的自动可视化参数但找不到网页输出在哪，也没有网页自动弹出，是什么问题呢，还有就是在参数重要性的pyrfr库里我已经将swig放入系统路径，但还是无法下载pyrfr库。 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='pypi.org', port=443): Read timed out. (read timeout=15)")': /simple/pyrfr/ error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [2 lines of output] [<setuptools.extension.Extension('pyrfr._regression') at 0x1e9fa671888>, <setuptools.extension.Extension('pyrfr._util') at 0x1e9fa64f848>] error: command 'swig.exe' failed: None [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for pyrfr ERROR: Could not build wheels for pyrfr, which is required to install pyproject.toml-based projects

jhj0411jhj commented 1 year ago
  1. 关于可视化，请在Optimizer定义时设置visualization='basic' 或 'advanced'，此时命令行和日志输出中应有路径提示。若要自动打开网页，请设置auto_open_html=True。如果还是不行，请提供openbox版本。
  2. 您是否使用的是windows系统？命令行输入swig -version能否正确显示swig版本？或者尝试pip install -i https://pypi.tuna.tsinghua.edu.cn/simple pyrfr能否安装？
yybnb commented 1 year ago

感谢您的回复，我的swig是3.0.12，但我加到环境变量里还是不行

openbox版本： Name: openbox Version: 0.7.19 Summary: Efficient and generalized blackbox optimization (BBO) system Home-page: https://github.com/PKU-DAIR/open-box Author: Thomas (Yang) Li from DAIR Lab@PKU Author-email: License: MIT Location: d:\anaconda\lib\site-packages Requires: ConfigSpace, cython, dill, emcee, matplotlib, numpy, pandas, platypus-opt, psutil, pyyaml, requests, scikit-learn, scikit-optimize, scipy, setuptools, statsmodels, terminaltables, tqdm Required-by:

这样也无法安装pyrfr： C:\Users\亿>pip install -i https://pypi.tuna.tsinghua.edu.cn/simple pyrfr Looking in indexes: https://pypi.tuna.tsinghua.edu.cn/simple Collecting pyrfr Downloading https://pypi.tuna.tsinghua.edu.cn/packages/17/c3/88ec42a429a8d439c912b42ca86c2686ca5a9ad60313a8e1f05728515ee7/pyrfr-0.9.0.tar.gz (295 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0.0/295.1 kB ? eta -:--:-- ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 295.1/295.1 kB 675.0 kB/s eta 0:00:00 Preparing metadata (setup.py) ... done Building wheels for collected packages: pyrfr Building wheel for pyrfr (setup.py) ... error error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [2 lines of output] [<setuptools.extension.Extension('pyrfr._regression') at 0x194cc991788>, <setuptools.extension.Extension('pyrfr._util') at 0x194cc96f748>] error: command 'swig.exe' failed: None [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for pyrfr Running setup.py clean for pyrfr Failed to build pyrfr ERROR: Could not build wheels for pyrfr, which is required to install pyproject.toml-based projects

jhj0411jhj commented 1 year ago

命令行输入swig -version是否无法正常显示版本？可能是环境变量没有正确添加。请将swig上层目录（例如C:\xxx\swigwin-3.0.12）附加至Path环境变量。

yybnb commented 1 year ago

您好，swig是可以正常显示的，但安装还是出现错误了。 不过您的openbox框架优化效果在我看来非常好，但在使用中遇到了一些问题我列在下面希望您可以指导一下： 1、可视化网页无法弹出，也无法找到文件路径 2、pyrfr库下载失败 3、在运行迭代次数过大时会出现中间200次左右报错

再次感谢您耐心的回复

杨亿博 @.***

 

------------------ 原始邮件 ------------------ 发件人: "PKU-DAIR/open-box" @.>; 发送时间: 2023年7月14日(星期五) 凌晨1:08 @.>; @.**@.>; 主题: Re: [PKU-DAIR/open-box] 关于可视化网页的问题 (Issue #67)

命令行输入swig -version是否无法正常显示版本？可能是环境变量没有正确添加。请将swig上层目录（例如C:\xxx\swigwin-3.0.12）附加至Path环境变量。

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

jhj0411jhj commented 1 year ago

您是否可以提供：（1）关于Optimizer初始化的代码（2）可视化无法弹出时的任务运行log日志文件内容（3）200次左右报错时信息。以供我们检查错误

yybnb commented 1 year ago

这是您需要的文件

杨亿博 @.***

 

------------------ 原始邮件 ------------------ 发件人: "PKU-DAIR/open-box" @.>; 发送时间: 2023年7月14日(星期五) 中午11:36 @.>; @.**@.>; 主题: Re: [PKU-DAIR/open-box] 关于可视化网页的问题 (Issue #67)

您是否可以提供：（1）关于Optimizer初始化的代码（2）可视化无法弹出时的任务运行log日志文件内容（3）200次左右报错时信息。以供我们检查错误

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

jhj0411jhj commented 1 year ago

请将代码及日志粘贴至回复中。通过邮件回复此issue时，邮件附件无法被查看

yybnb commented 1 year ago

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报错：RuntimeWarning: overflow encountered in exp   (np.exp(0.5 var_ + m) norm.cdf(v - std)) D:\Anaconda\lib\site-packages\openbox\acquisitionfunction\acquisition.py:382: RuntimeWarning: invalid value encountered in multiply   (np.exp(0.5 * var + m) norm.cdf(v - std)) D:\Anaconda\lib\site-packages\openbox\acquisition_function\acquisition.py:382: RuntimeWarning: overflow encountered in exp   (np.exp(0.5 var_ + m) norm.cdf(v - std)) D:\Anaconda\lib\site-packages\openbox\acquisition_function\acquisition.py:382: RuntimeWarning: invalid value encountered in multiply   (np.exp(0.5 var_ + m) norm.cdf(v - std)) D:\Anaconda\lib\site-packages\openbox\acquisition_function\acquisition.py:382: RuntimeWarning: overflow encountered in exp   (np.exp(0.5 var_ + m) * norm.cdf(v - std)) Traceback (most recent call last):   File "D:/桌面/卷积/TTD计算 - 副本.py", line 313, in <module>     opt.run()   File "D:\Anaconda\lib\site-packages\openbox\optimizer\generic_smbo.py", line 212, in run     self.iterate(budget_left=self.budget_left)   File "D:\Anaconda\lib\site-packages\openbox\optimizer\generic_smbo.py", line 219, in iterate     config = self.config_advisor.get_suggestion()   File "D:\Anaconda\lib\site-packages\openbox\core\generic_advisor.py", line 397, in get_suggestion     num_points=5000)   File "D:\Anaconda\lib\site-packages\openbox\acq_maximizer\ei_optimization.py", line 697, in maximize     initial_configs = self.random_search.maximize(runhistory, num_points, kwargs).challengers   File "D:\Anaconda\lib\site-packages\openbox\acq_maximizer\ei_optimization.py", line 522, in maximize     runhistory, self.n_sls_iterations, kwargs   File "D:\Anaconda\lib\site-packages\openbox\acq_maximizer\ei_optimization.py", line 282, in _maximize     start_point, kwargs)   File "D:\Anaconda\lib\site-packages\openbox\acq_maximizer\ei_optimization.py", line 349, in _one_iter     acq_val = self.acquisition_function([neighbor], kwargs)   File "D:\Anaconda\lib\site-packages\openbox\acquisition_function\acquisition.py", line 86, in call     acq = self._compute(X, **kwargs)   File "D:\Anaconda\lib\site-packages\openbox\acquisition_function\acquisition.py", line 399, in _compute     "Expected Improvement is smaller than 0 for at least one sample.") ValueError: Expected Improvement is smaller than 0 for at least one sample.   1%|          | 201/20000 [10:37<17:27:09,  3.17s/it]

代码：

定义优化参数的搜索空间

cs = ConfigurationSpace() cs.add_hyperparameter(UniformFloatHyperparameter('alpha', 0, 5)) cs.add_hyperparameter(UniformFloatHyperparameter('beta', 0, 3000))

cs.add_hyperparameter(UniformFloatHyperparameter('K',0.8, 1.5))

cs.add_hyperparameter(UniformFloatHyperparameter('Q0', -3 , 0))

cs.add_hyperparameter(UniformFloatHyperparameter('m', 0, 5))

目标函数

def objective_func(config):     alpha = config['alpha']     beta = config['beta']     # K = config['K']     Q0 = config['Q0']     # m = config['m']     # Q_iso0 = config['Q_iso0']     # Peffiso, PE = PE(P_iso, P, E, m)     C_calculate_G = juanji_G(P ,P_iso, alpha, beta, Q0)     NSE = Nash(C_calculate_G, Q_iso)     obj1 = 1 - NSE

    fyw_c = fyw_ci(alpha, beta)     fyw = Fyw(P_iso, Q_iso)     obj2 = abs((fyw_c - fyw) / fyw)

    actual_array = np.array(Q_iso[500: ])     predicted_array = np.array(C_calculate_G[500:])

    squared_errors = abs(actual_array - predicted_array)     rmse = np.sqrt(np.max(squared_errors))

    return [obj1, obj2]

创建随机森林代理模型

rf_model = RandomForestRegressor()

创建 OpenBox 优化器

opt = Optimizer(     objective_func,                      # 目标函数     cs,                                  # 搜索空间     num_objectives=2,     surrogate_type='prf',                 # 代理模型类型为随机森林     acq_type='logei',     acq_optimizer_type='random_scipy',     initial_runs=200,     init_strategy='sobol',     task_id='JM',     random_state=1,     max_runs=20000,                        # 运行的最大次数     acquisition_type='ei' ,                # 采集函数类型为EI     # Have a try on the new HTML visualization feature!     visualization='advanced',   # or 'basic'. For 'advanced', run 'pip install "openbox[extra]"' first     auto_open_html=True,        # open the visualization page in your browser automatically

)

进行优化

opt.run()

history = opt.get_history() print(history)

history.plot_convergence() plt.show() print(history.get_importance())

history.visualize_html(open_html=True, show_importance=True, verify_surrogate=True, optimizer=opt)

杨亿博 @.***

 

------------------ 原始邮件 ------------------ 发件人: "PKU-DAIR/open-box" @.>; 发送时间: 2023年7月14日(星期五) 下午2:58 @.>; @.**@.>; 主题: Re: [PKU-DAIR/open-box] 关于可视化网页的问题 (Issue #67)

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jhj0411jhj commented 1 year ago
  1. 日志前面应该还有关于可视化的输出信息。如果您未能成功安装pyrfr，请先设置visualization='basic'，否则将无法正常运行。
  2. 请设置acq_type='ei'，200轮以后的报错看起来是由logei导致的。
  3. 由于pyrfr未能成功安装，您可以设置surrogate_type='gp'，不过由于总轮次为20000过大，BO算法运行到后期可能速度非常慢，建议尝试随机搜索或遗传算法。
jhj0411jhj commented 11 months ago

此issue将被关闭。如果仍存在问题，您可以重新打开此issue。