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PLAST-software / plast-library

PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations.
http://plast.inria.fr
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Java runtime required, but not mentioned in requirements. #7

Open aminiussi opened 4 years ago

aminiussi commented 4 years ago

Hi,

The linux requirements mention:

            kernel 2.6+ ;
            gcc 4.4+ ;
            cmake 2.8+

But Java is required in CMake file:

find_package (JNI REQUIRED)

As a result, config fails with:

[alainm@gemini rel]$ cmake .. -DCMAKE_BUILD_TYPE=Release
CMake Error at /trinity/shared/apps/170135/x86_64/cmake-3.9.4/share/cmake-3.9/Modules/FindPackageHandleStandardArgs.cmake:137 (message):
  Could NOT find JNI (missing: JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2
  JAVA_AWT_INCLUDE_PATH)
Call Stack (most recent call first):
  /trinity/shared/apps/170135/x86_64/cmake-3.9.4/share/cmake-3.9/Modules/FindPackageHandleStandardArgs.cmake:377 (_FPHSA_FAILURE_MESSAGE)
  /trinity/shared/apps/170135/x86_64/cmake-3.9.4/share/cmake-3.9/Modules/FindJNI.cmake:310 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  CMakeLists.txt:5 (find_package)

-- Configuring incomplete, errors occurred!
See also "/beegfs/home/alainm/install/plast-library/rel/CMakeFiles/CMakeOutput.log".
[alainm@gemini rel]$