Segmentation fault on new NCBI nr and nt databases (2021)

PLAST-software / plast-library

PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations.

http://plast.inria.fr

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Segmentation fault on new NCBI nr and nt databases (2021) #9

Open xhu556 opened 3 years ago

xhu556 commented 3 years ago

plast -p plastp -d ../../ncbi_nr/nr.pal -i db/tursiops.fa -o test.fa.nr.plastp.xml -e 5e-5 -a 8 -max-hsp-per-hit 1 -max-hit-per-query 10 -seeds-use-ratio 100 -outfmt 4 -force-query-order 1000 -bargraph Segmentation fault (core dumped)

plast -p plastn -i plast/db/query.fa -d../../ncbi_nt/nt.nal -o out.csv Segmentation fault (core dumped)

ZhihaoXie commented 3 years ago

I encountered similar error，and my cmd is "plast -p plastn -e 1e-5 -a 10 -max-hsp-per-hit 250 -max-hit-per-query 250 -i Anaplasma_marginale.0.5.fa -d db_noVirus_v1.fa.nal -o Anaplasma_marginale.blastto.db.tsv". And error message: Segmentation fault (core dumped) How do I solve this error? Tip: plast v2.3.1