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PMBio / MuDataSeurat

.h5mu files interface for Seurat
https://pmbio.github.io/MuDataSeurat/
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The anndata package expects 'anndata', not 'AnnData' as encoding-type #15

Closed vals closed 11 months ago

vals commented 1 year ago

It seems this line is causing H5AD files saved with MuDataSeurat to not be read.

https://github.com/PMBio/MuDataSeurat/blob/9a66a48bf00ea0e6d90f33654a5dc952d2ffb755/R/WriteUtils.R#L29

Compare with the reading code here: https://github.com/scverse/anndata/blob/b118ba4bfb182a29509d7b07cb5966fb0297be5a/anndata/_io/h5ad.py#L222

Best, /Valentine

ilia-kats commented 11 months ago

This is fixed in master.