This PR changes the default values in the annotation config file to use the normalized bcf files from the preprocessing pipeline as an input.
Tests
a smoke test with the example data will be performed automatically by github, which should make sure that the paths all exist in the example data, the pipeline was tested locally with bcf files.
What
This PR changes the default values in the annotation config file to use the normalized bcf files from the preprocessing pipeline as an input.
Tests
a smoke test with the example data will be performed automatically by github, which should make sure that the paths all exist in the example data, the pipeline was tested locally with bcf files.