PMBio / deeprvat

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Preprocessing uppercase fasta file #40

Closed endast closed 7 months ago

endast commented 7 months ago

This PR updates the preprocessing pipeline and adds a rule that makes sure that the fasta file is in uppercase. The uppercased fasta file is required by the annotation pipeline.

This pr is based on this pr: https://github.com/PMBio/deeprvat/pull/39. So that PR should be merged first.

preprocess_rulegraph_no_qc preprocess_rulegraph_with_qc