Closed endast closed 2 months ago
This PR adds support for filtering WGS data in the preprocesing pipeline using a gtf file.
we use convert2bed bedtools slop and get_features.pl
convert2bed
bedtools slop
TBD
What
This PR adds support for filtering WGS data in the preprocesing pipeline using a gtf file.![image](https://github.com/PMBio/deeprvat/assets/135472/e538c96a-90d8-4316-8631-fc294f73b6b7)
we use
convert2bed
bedtools slop
and get_features.plTesting
TBD
Test scenarios
TBD