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PMBio / deeprvat

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add association_only flag into config rule #77

Closed meyerkm closed 1 month ago

meyerkm commented 2 months ago

What

Fixes the config rule in the snakemake pipelines to include the association_only flag, necessary for update-config function in config.py. Fixes both basic and cv-split training setups.

Testing

Pytests completed and successfully ran on sample data.

meyerkm commented 1 month ago

These edits have been incorporated in the PR Revert "Feature streamline cv training" #79