This PR updates the preprocessing pipeline so that the add_variants_id now filters the output if the --chromosomes flag is used. There are also new tests for this functionality.
You can run the tests in the tests/preprocessing directory. And also run the example preprocessing pipeline, and try changing the chromosomes in the config and make sure it filters it correctly.
What
This PR updates the preprocessing pipeline so that the add_variants_id now filters the output if the
--chromosomesflag is used. There are also new tests for this functionality.Wait for this PR to be merged first: https://github.com/PMBio/deeprvat/pull/86
Testing
You can run the tests in the
tests/preprocessingdirectory. And also run the example preprocessing pipeline, and try changing the chromosomes in the config and make sure it filters it correctly.