PMBio / limix-backup

http://pmbio.github.io/limix/
Apache License 2.0
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limix not appearing in pip freeze (with virtualenv) when built from source #7

Closed chartl closed 8 years ago

chartl commented 9 years ago

Potentially related to #4 . I recently installed limix from source; it's importable and usable, but does not appear either in pip freeze, or by manually listing libraries using pip.


>>> import os
>>> os.system('cat /proc/version')
Linux version 2.6.32-431.20.3.el6.x86_64 (mockbuild@c6b9.bsys.dev.centos.org) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) ) #1 SMP Thu Jun 19 21:14:45 UTC 2014
0
>>> import pip
>>> import limix
>>> print('\n'.join(sorted(['{}=={}'.format(i.key, i.version) for i in pip.get_installed_distributions()])))
biopython==1.64
blist==1.3.6
brewer2mpl==1.4.1
cython==0.21
fastlmm==0.2.2
guppy==0.1.10
h5py==2.4.0b1
matplotlib==1.4.2
mmh3==2.3
mock==1.0.1
nose==1.3.4
numpy==1.9.0
pandas==0.14.1
patsy==0.3.0
pyfasta==0.5.2
pyparsing==2.0.3
pysam==0.8.0
python-dateutil==2.2
pytz==2014.7
pyvcf==0.6.7
scikit-learn==0.15.2
scipy==0.14.0
scons==2.3.4
six==1.8.0
statsmodels==0.6.1
virtualenv==12.0.dev1
wsgiref==0.1.2
horta commented 8 years ago

Hello chartl (I know that this thread is really old, sorry about that)

We have made many modifications of how Limix is installed so I will close this issue. But please let us know if you have any other problem.