PMCC-BioinformaticsCore janis issues

PMCC-BioinformaticsCore / janis

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

https://janis.readthedocs.io/

GNU General Public License v3.0

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Release v0.13.1

#62 rlupat closed 1 year ago
0
Release v0.13.0

#61 rlupat closed 1 year ago
0
Release v0.12.0

#60 rlupat closed 1 year ago
0
Fix formatting of text

#59 kinow opened 3 years ago
0
Add fromwdl to janisdk

#58 illusional closed 1 year ago
1
Add CWL / WDL version info to Janis

#57 illusional closed 3 years ago
0
Display version of CWL/WDL/etc supported

#56 kinow closed 3 years ago
3
Small typo in docs

#55 kinow closed 3 years ago
1
Missing .gitmodules?

#54 kinow opened 3 years ago
2
Missing output in tutorial `tools/alignment.py`?

#53 kinow opened 3 years ago
0
Several warnings when downloading data for Tutorial 1

#52 kinow opened 3 years ago
1
Feedback after reading tutorials

#51 kinow opened 3 years ago
0
Update unit_tests.yml

#50 junyk closed 3 years ago
0
upgrade janis-core and janis-assistant to include sha3 changes

#49 junyk closed 3 years ago
0
upgrade to v0.11.3

#48 junyk closed 3 years ago
1
Update Spartan template to run in the background by default and auto load spartan modules

#47 junyk closed 3 years ago
0
documentation on mapping WDL concepts to CWL concepts

#46 mr-c opened 3 years ago
1
Test report update

#45 junyk closed 3 years ago
0
GitHub action

#44 junyk closed 3 years ago
4
Fixed versions

#43 junyk closed 3 years ago
0
Improve error messages

#42 junyk closed 3 years ago
0
Add prepare docs

#41 illusional closed 3 years ago
0
Add janisdk fromcwl method

#40 illusional closed 3 years ago
1
Cleanup container cli and methods

#39 illusional closed 3 years ago
1
Handle the case when errors occur during the workflow execution

#38 junyk closed 3 years ago
0
If a workflow fails during a test, test fail steps are not exited

#37 illusional opened 3 years ago
0
Add wrapper command when running janisdk depending on env

#36 junyk closed 3 years ago
0
Unittest doc + make test case optional to run all test cases

#35 junyk closed 3 years ago
1
V0.11.x

#34 illusional closed 3 years ago
0
Formalise Developer Toolkit

#33 illusional closed 3 years ago
0
Add config to janisdk run-test

#32 illusional closed 3 years ago
0
Janis Developer Toolkit

#31 illusional opened 3 years ago
0
Fix typos

#30 bjpop closed 3 years ago
0
Error parsing generated wdl using pbs_singularity

#29 lonsbio closed 4 years ago
4
Merge Expressions docs into master

#28 illusional closed 4 years ago
0
Incompatible versions of cwltool/cwl-utils/schema-salad in dependencies

#27 pansapiens closed 4 years ago
2
Add unit testing to janis-bioin for evaluating tools

#26 illusional opened 4 years ago
1
janis query --status hard to use

#25 bjpop closed 4 years ago
1
Remove an extra comma

#24 drtconway closed 4 years ago
1
janis query critical error: [CRITICAL]: Couldn't check workflow 'cdad71': No module named 'janis_assistant.data.models.filescheme'

#23 bjpop closed 4 years ago
2
janis query suggests using 'janis cleanup' to clean up your tasks, but cleanup is not accepted as an argument

#22 bjpop closed 4 years ago
2
Trivial typo

#21 drtconway closed 4 years ago
1
janis watch support 'q' for quit

#20 bjpop opened 4 years ago
1
question: add arguments to workflow step inputs

#19 matthdsm opened 4 years ago
6
documentation: WildcardSelector

#18 matthdsm closed 4 years ago
2
cwl/wdl basename methods

#17 matthdsm opened 4 years ago
2
Update tutorials to 0.9.x

#16 illusional closed 4 years ago
0
omit docker runtime when container is none

#15 matthdsm closed 4 years ago
6
Examples not working

#14 tirohia closed 4 years ago
3
documentation: subworkflows

#13 matthdsm opened 4 years ago
9