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PMCC-BioinformaticsCore
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janis-bioinformatics
Repository of bioinformatics tools for the pipelines module
GNU General Public License v3.0
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Release v0.12.2
#129
rlupat
closed
1 year ago
0
Release v0.12.0
#128
GraceAHall
closed
1 year ago
0
Release v0.12.1
#127
rlupat
closed
1 year ago
0
Bugfix gatherfilesmultiqc
#126
rlupat
closed
1 year ago
0
remove the intermediate sample names for refiltering
#125
SebastianHollizeck
closed
1 year ago
0
mRNA expression pipeline related tools
#124
jiaan-yu
closed
2 years ago
0
Merge master into oncopipe
#123
jiaan-yu
closed
2 years ago
0
Add new tools to localise files, and fixes tools with stdout output
#122
jiaan-yu
closed
2 years ago
1
Bug fix: correctly parse adapter/contaminant sequence from fastqc
#121
jiaan-yu
closed
2 years ago
0
Add RNASeq Fusion Workflow related tools
#120
jiaan-yu
closed
1 year ago
1
Add required metadata to gatherfilesformultiqc
#119
rlupat
closed
2 years ago
0
Add tool RNASeqQC and minor fix
#118
jiaan-yu
closed
2 years ago
0
__doc__ of FastqcSingleScattered versions.py is None
#117
kinow
opened
3 years ago
1
Add tool CircosPlot
#116
jiaan-yu
closed
2 years ago
0
Fix typos on README and python comments
#115
kinow
closed
1 year ago
0
Change samtools mpileup
#114
jiaan-yu
closed
3 years ago
0
Fix the output files matching of Manta
#113
jiaan-yu
closed
3 years ago
0
Release v0.12.0
#112
junyk
closed
1 year ago
0
Fix vardict filter
#111
jiaan-yu
closed
3 years ago
0
restore space between -R and its argument
#110
junyk
closed
3 years ago
0
Changes related to Nextflow implementation
#109
junyk
closed
3 years ago
0
Fixed a bug where freebayes would create the same variant twice
#108
SebastianHollizeck
closed
2 years ago
1
Remove split bam step from gatk calling
#107
jiaan-yu
closed
3 years ago
1
Set Bcftools concat input to UnionType
#106
jiaan-yu
closed
3 years ago
1
Reduce test files
#105
junyk
closed
3 years ago
3
upgrade to v0.11.1
#104
junyk
closed
3 years ago
1
Rename GenerateIntervalByChromosome
#103
jiaan-yu
closed
3 years ago
1
Add tool GenerateMantaConfig
#102
jiaan-yu
closed
3 years ago
0
Clean up and add new tools in bcftools
#101
jiaan-yu
closed
3 years ago
0
Unit test wgssomatic
#100
xinzhel97
closed
3 years ago
9
Remove "chromNamesAreNumbers" option from VarDict - fix bug
#99
jiaan-yu
closed
3 years ago
0
Add gridss version 2.8.3
#98
jiaan-yu
closed
3 years ago
0
Include test data in subdirectories
#97
junyk
closed
3 years ago
0
Gridss 2.10
#96
jiaan-yu
closed
3 years ago
1
Unit test wgsgermline workflow
#95
xinzhel97
closed
3 years ago
9
Add facets and minor bug fixing wgs pipeline
#94
jiaan-yu
closed
3 years ago
1
Add facets and bug fixing
#93
jiaan-yu
closed
3 years ago
0
Improving janis-bioinformatics structure
#92
illusional
opened
3 years ago
0
Simplifying version definitions
#91
illusional
opened
3 years ago
0
Refactor GATK4 tool IDS
#90
illusional
opened
3 years ago
0
Test files
#89
junyk
closed
3 years ago
1
cleanup of spagetti code through inheritance
#88
SebastianHollizeck
closed
3 years ago
1
major restructure
#87
SebastianHollizeck
closed
3 years ago
0
update versions for tools
#86
SebastianHollizeck
closed
3 years ago
0
More generic lookup of test_data folder
#85
junyk
closed
3 years ago
0
Oncopipe variant calling update
#84
jiaan-yu
closed
3 years ago
4
Added tool metadata, added github actions hook, removed travis
#83
junyk
closed
3 years ago
0
V0.11.x
#82
illusional
closed
3 years ago
1
Unit tests for bioinformatics tool
#81
junyk
closed
3 years ago
1
Janis prepare
#80
illusional
closed
3 years ago
0
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