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PMCC-BioinformaticsCore / janis-core

Core python modules for Janis Pipeline workflow assistant
GNU General Public License v3.0
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ModuleNotFoundError: No module named 'cwl_utils.parser_v1_2' #105

Open ntachukwu opened 2 years ago

ntachukwu commented 2 years ago

after installing janis pipelines. Running janisdk fromcwl bwamem.cwl gives the error ModuleNotFoundError: No module named 'cwl_utils.parser_v1_2'

I believe the cwl_utils module has a different file structure. check cwl_utils.parser.cwl_v1_2

rlupat commented 2 years ago

Hi @Th3nn3ss - thanks for letting us know. I just pushed the changes to pin cwl-utils to v0.11 As you said, the latest release of cwl_utils has a different structure.

This should fix the issue for now. I'll look into updating the modules in the coming days.