Open drtconway opened 4 years ago
I note, that once I've worked out how to get just one job at a time running, I'll probably make it the default for my docker image.
I don't have any mechanism for arbitrarily providing Cromwell configuration params - only a way to provide a complete cromwell configuration. I can work with you to build a PR, but there are a few ways:
Or, you can add the respective keys to the generic CromwellConfiguration and change the Singularity template to respect those new keys - I think this is the least best option though.
The class System already has one of them, aparently (line 180, and related in that class):
"max_concurrent_workflows": "max-concurrent-workflows",
but I didn't see it showing up.
I agree though, making a template is probably a good way to go. It fits the model.
It looks straight-forward. After the cluster users' seminar this morning, I'll have a crack at it.
Hi Janis,
I'm running Janis with Cromwell+Singularity on my Ubuntu box, and I want to scatter in my workflow, but when I do, it tries to run a large number of big jobs all at once. Since my machine has nowhere near enough resources to run (e.g.) 10 BWA jobs concurrently, I tried changing the Cromwell configuration in my
janis.config
but it has no effect.My config is
I assmume this is not correct, because there's nothing reflecting the two cromwell options in the cromwell configuration in my run directory: