Add a generic test for File data type - Githubissues

PMCC-BioinformaticsCore / janis-core

Core python modules for Janis Pipeline workflow assistant

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Add a generic test for File data type #75

Closed xinzhel97 closed 3 years ago

xinzhel97 commented 3 years ago

File class is extended by other data types such as tar and zip and thus we can call this generic test for tar and zip files. It's difficult to design specific tests for tar and zip files since we can't predict what's inside them

janis-bot commented 3 years ago

Test Succeeded for group 60b8623a7423dc52134f1d0d.

Bioinformatics Tools:

ParseFastqcAdaptors.None (Nectar - cromwell): Test Succeeded
ParseFastqcAdaptors.None (Spartan - cromwell): Test Succeeded
SamToolsFlagstat.None (Nectar - cromwell): Test Succeeded
SamToolsFlagstat.None (Spartan - cromwell): Test Succeeded
Gatk4HaplotypeCaller.None (Nectar - cromwell): Test Succeeded
Gatk4HaplotypeCaller.None (Spartan - cromwell): Test Succeeded
performanceSummary.None (Nectar - cromwell): Test Succeeded
performanceSummary.None (Spartan - cromwell): Test Succeeded

WGSGermlineGATK:

WGSGermlineGATK.brca1 (Nectar - cromwell): Test Succeeded

Small Bioinformatics Workflow:

bwaaligner.None (Nectar - cromwell): Test Succeeded
bwaaligner.None (Nectar - cwltool): Test Succeeded