Import error in Base.py

[kweishaupt]

Describe the bug I get the following error when trying to import openpnm (latest devel version)

Python 3.8.8 (default, Apr 13 2021, 19:58:26) 
[GCC 7.3.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import openpnm as opm
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/kilian/Downloads/Software/OpenPNM/openpnm/__init__.py", line 57, in <module>
    from . import core
  File "/home/kilian/Downloads/Software/OpenPNM/openpnm/core/__init__.py", line 106, in <module>
    from .Base import Base
  File "/home/kilian/Downloads/Software/OpenPNM/openpnm/core/Base.py", line 12, in <module>
    @docstr.get_sections(base='Base', sections=['Parameters'])
TypeError: get_sections() missing 1 required positional argument: 's'

I have updated all packages of conda and I am using Ubuntu 21.04.

A colleague of mine using MacOS, Python 3.9.2 and openpnm-2.7.0-py3-none-any.whl gets the same error.

[jgostick]

You need to update docrep to the latest version (0.3 or greater). It's super annoying that pip does not automatically update the dependencies when you update openpnm.

[kweishaupt]

Thanks, that solved my issue!

There are two further problems related to porespy (installed via pip install -e path/to/repo):

• loguru needs to be installed manually
• scikit-fmm needs to be installed manually

[jgostick]

We can added loguru to the pip install, but scikit-fmm needs to be done via conda. We are trying to move to 'mandatory' conda install, but also want the code to work with just pip, so I will update the package to install loguru and to only import scikit-fmm if found. Thanks.