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PNNL-Comp-Mass-Spec
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DeepKS
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Nature Atlas Corroboration (NEW)
#30
Ben-Drucker
opened
1 year ago
1
Different Model (RNN + CNN, LSTM, etc.) with Tim
#29
Ben-Drucker
opened
1 year ago
0
Validation of the validation DeepKS vs Atlas
#28
vladpetyuk
opened
1 year ago
2
Batch numbers in training don't appear correct
#27
Ben-Drucker
opened
1 year ago
0
Misc fixes that need to happen
#26
Ben-Drucker
opened
1 year ago
0
Convert raw scores to probabilities
#25
Ben-Drucker
opened
1 year ago
0
Reimaging issues
#24
Ben-Drucker
opened
1 year ago
1
Analyze ROC curves to determine appropriate cutoffs for each group
#23
Ben-Drucker
opened
1 year ago
0
Implement Python 3.11 compatability for better error messages, etc.
#22
Ben-Drucker
opened
1 year ago
0
Determine how well Atlas results corroborate PSP KS database
#21
Ben-Drucker
opened
1 year ago
3
PyTorch installation in container is not correct (`cuda` not available)
#20
Ben-Drucker
closed
1 year ago
0
Install R in Container
#19
Ben-Drucker
closed
1 year ago
0
Invalid Python Interpreter VS Code Message
#18
Ben-Drucker
opened
1 year ago
0
Add pre-commit hook to facilitate automatic re-`html`ing of `index.md`
#17
Ben-Drucker
closed
1 year ago
1
Add `.fasta` input sequence support
#16
Ben-Drucker
opened
1 year ago
0
Add support for different levels of verbosity
#15
Ben-Drucker
opened
1 year ago
0
Convert all Jupyter notebooks to `.py` for easier, more straightforward running
#14
Ben-Drucker
closed
1 year ago
1
Add feature to bypass group classifier if group annotations are known
#13
Ben-Drucker
closed
1 year ago
0
Validate with Nature Paper
#11
Ben-Drucker
closed
1 year ago
1
Readthedocs-based documentation
#10
Ben-Drucker
opened
1 year ago
0
Reimage docker container with clear Dockerfile
#9
Ben-Drucker
opened
1 year ago
0
Create Powerpoint presentation and link to documentation
#8
Ben-Drucker
opened
1 year ago
0
Add file explainer in documentation
#7
Ben-Drucker
closed
1 year ago
0
Add automated testing and/or code coverage chips to readme
#6
Ben-Drucker
opened
1 year ago
0
Add tests to reach at least 80% code coverage
#5
Ben-Drucker
opened
1 year ago
0
Option to have group predictions in output
#4
Ben-Drucker
closed
1 year ago
0
Support non-JSON output
#3
Ben-Drucker
closed
1 year ago
0
Created Venn diagram to visualize kinase overlap between PSP, Uniprot, and Kinbase
#2
Ben-Drucker
closed
1 year ago
0
Retrain model with all data
#1
Ben-Drucker
closed
1 year ago
0