Is it possible to write the MS/MS sequence tag results to a file before running the scoring algorithms? I'm seeing many scans with sequence tags but end with 0 matches after the final scoring step. It would be useful to obtain the sequence tag information for MS2 scans, so one could determine why these are not significant matches (poor MS1 envelope similarity, low # of matching fragments, etc).
Is it possible to write the MS/MS sequence tag results to a file before running the scoring algorithms? I'm seeing many scans with sequence tags but end with 0 matches after the final scoring step. It would be useful to obtain the sequence tag information for MS2 scans, so one could determine why these are not significant matches (poor MS1 envelope similarity, low # of matching fragments, etc).