Updated loading functions. Added updated correction script for phospho data, as well as the nmf scripts (in progress)

PNNL-CompBio / BeatAMLproteomics

Analysis of the 210 patient cohort processed by the OHSU/PNNL PTRC

MIT License

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Updated loading functions. Added updated correction script for phospho data, as well as the nmf scripts (in progress) #22

Closed CamiloPosso closed 2 years ago

CamiloPosso commented 2 years ago

The load.phospho.data function now takes a parameter to select which type to load. Defaults to corrected.

The new batch/loading mass correction script the original data on synapse, no local files needed. Change n.plexes to alter the filtering done, but beware the sites where the regression needed for the correction fails.

CamiloPosso commented 2 years ago

Updated the files to account for the feedback