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PNNL-CompBio / BeatAMLproteomics

Analysis of the 210 patient cohort processed by the OHSU/PNNL PTRC
MIT License
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Build networks using differential expression from gene mutations #52

Closed sgosline closed 2 years ago

sgosline commented 2 years ago

Camilo has updated gene mutation data with all variants of interest. Now, use the amlresistancenetworks code to build networks. and then use James' code to do the enrichment.

1- for each variant of interest, compute differential expression of proteins, phosphosites, and transcripts 2- feed combined set of features into network code 3- build network, push to synapse, visualize using Cytoscape

sgosline commented 2 years ago

This was done by @CamiloPosso , it just wasn't linked in the PR