PNNL-CompBio / CONCERTO

Continuous integration and validation for genome-scale metabolic model consortia
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Updating the Cyano confusion matrix with the new model #94

Closed djinnome closed 1 year ago

djinnome commented 1 year ago

Hi @JamesPino

According to Santos-Merino 2023, they reported the following confusion matrix:

Screen Shot 2023-05-30 at 7 55 54 PM

Can we run this updated cyano model on the phenotype observations we have collected for Cyano to see if we get similar numbers?

[1] María Santos-Merino, Álvaro Gargantilla-Becerra, Fernando de la Cruz, and Juan Nogales. 2023. Highlighting the potential of Synechococcus elongatus PCC 7942 as platform to produce α-linolenic acid through an updated genome-scale metabolic modeling. Front. Microbiol. 14, (March 2023), 1126030.

djinnome commented 1 year ago

Hey @JamesPino , were you able to get final numbers for the new cyano confusion matrix?

JamesPino commented 1 year ago

[328 142] [ 71 244]

djinnome commented 1 year ago

TP: 328 FN: 142 FP: 71 TN: 244

Cyano Predicted Growth
Actual Growth+ -
+244142
-71328
JamesPino commented 1 year ago

confusion_matrix