Right now in the Consortium repo, there exists the micom models as well as 3 binary models in cobra format. Andrew pathed the way and provided notebooks to generate them. Moving forward, we would like to recreate them in a streamlined way.
[x] - Generate function for micom model construction
[x] Update database information for each organisms automatically (n metabolites/reactions).
[ ] - Generate function for single cobra model from multiple organisms.
Right now, creating micom models is straight forward and functionalized. To generate the single cobra model from multiple, we currently use the micom model to gather reactions and add them to a crafted model. I am seeing if its possible not to use the micom model to do so, if not I am not sure why we don't just leverage the micom model?
Right now in the Consortium repo, there exists the micom models as well as 3 binary models in cobra format. Andrew pathed the way and provided notebooks to generate them. Moving forward, we would like to recreate them in a streamlined way.
Right now, creating micom models is straight forward and functionalized. To generate the single cobra model from multiple, we currently use the micom model to gather reactions and add them to a crafted model. I am seeing if its possible not to use the micom model to do so, if not I am not sure why we don't just leverage the micom model?