Regnet in pyro - Githubissues

PNNL-CompBio / SERGIO

A simulator for single-cell expression data guided by gene regulatory networks

GNU General Public License v3.0

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Open djinnome opened 1 year ago

djinnome commented 1 year ago

[ ] Complete the Lotka-volterra dynamics
[ ] Open the repository
[ ] Start on Hill equation dynamics
[ ] Stretch goal: boolean regulatory network with priors over $2^{2^k}$ possible functions where $k$ is the number of parents
[ ] Super stretch goal: ternary regulatory network with priors over $3^{3^k}$ possible functions where $k$ is the number of parents

djinnome commented 1 year ago

Differences between SERGIO and Lotka-Volterra regnets

Hill equation (SERGIO) vs 2nd order ODE
stochastic differential equation (SERGIO) vs random differential equation (Lotka-volterra)