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PNNL-CompBio
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SERGIO
A simulator for single-cell expression data guided by gene regulatory networks
GNU General Public License v3.0
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Regnet in pyro
#10
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djinnome
opened
1 year ago
djinnome
commented
1 year ago
[ ] Complete the Lotka-volterra dynamics
[ ] Open the repository
[ ] Start on Hill equation dynamics
[ ] Stretch goal: boolean regulatory network with priors over $2^{2^k}$ possible functions where $k$ is the number of parents
[ ] Super stretch goal: ternary regulatory network with priors over $3^{3^k}$ possible functions where $k$ is the number of parents
djinnome
commented
1 year ago
Differences between SERGIO and Lotka-Volterra regnets
Hill equation (SERGIO) vs 2nd order ODE
stochastic differential equation (SERGIO) vs random differential equation (Lotka-volterra)