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PNNL-CompBio / Snekmer

Pipeline to apply encoded Kmer analysis to protein sequences
BSD 3-Clause "New" or "Revised" License
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Functionmotifs #116

Closed tnitka closed 3 months ago

tnitka commented 10 months ago

Add Motif mode for identification of functionally relevant sequence motifs

christinehc commented 10 months ago

Hi Tara, I recommend running

snakefmt <snakefile.smk>

to automatically lint/format the code and then push those changes in order to pass the format check.

christinehc commented 10 months ago

This may be failing for the same reason as Jeremy's PR. Try applying this possible fix?: https://github.com/PNNL-CompBio/Snekmer/pull/115#issuecomment-1830849171

tnitka commented 10 months ago

The test is now failing on Learn, as in #115. This pull request doesn't touch Learn/Apply (in fact Learn/Apply was only added to this branch when I rebased on Monday), so this appears to be a problem with the test workflow.

christinehc commented 9 months ago

Please remember to update the version here before pushing. Depending on whether #115 gets merged first or not, try to coordinate versions (I suggest 1.2.0 for #115 and 1.3.0 for this update, unless we do a simultaneous 1.2.0)