Pin numpy to 1.22.3 in environment_BSF.yml and environment_Windows.yml

PNNL-CompBio / Snekmer

Pipeline to apply encoded Kmer analysis to protein sequences

BSD 3-Clause "New" or "Revised" License

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Pin numpy to 1.22.3 in environment_BSF.yml and environment_Windows.yml #124

Open tnitka opened 5 months ago

tnitka commented 5 months ago

Fixes #123.

christinehc commented 4 months ago

@tnitka @jjacobson95 I added a specification for newer HDBSCAN versions due to installation errors arising from older versions of HDBSCAN, but have also updated the spec to use pip install snekmer rather than pip install -e git+https://github.com/PNNL-CompBio/Snekmer#egg=snekmer. I recommend these changes be tested before changes are merged into main

christinehc commented 4 months ago

Sidenote: HDBSCAN needs to be fixed to hdbscan==0.8.29 (and scikit-learn==1.2.2) due to this bug (see StackOverflow). I have updated this on the background branch but not on this one.

christinehc commented 3 months ago

We should bundle #125 fixes here