Compute protein marker-transcript correlation

PNNL-CompBio / cNFOrganoidAnalysis

4 stars 1 forks source link

Compute protein marker-transcript correlation #4

Closed sgosline closed 3 years ago

sgosline commented 3 years ago

1- create script that pulls RNA-seq and protein marker from synapse (after uploading in #3 ) 2- rank transcripts that correlate with each marker 3- run GSEA on rankings to identify pathway enrichment/depletion Create Pull request to commit code here.

sgosline commented 3 years ago

As an example you can look at what I did with the deconvolution: https://github.com/sgosline/cNFOrganoidAnalysis/blob/master/ihcToDeconv.R

sgosline commented 3 years ago

This is closed by #8.