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PNNL-CompBio / cNFOrganoidAnalysis

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Collect matrisome proteins and analyze in the context of the organoids #9

Open sgosline opened 3 years ago

sgosline commented 3 years ago

1- download matrisome genes, put them on synapse table 2- plot the expression of these genes in heatmaps across the RNA-seq data from the cNFs 3- compute the correlations for each matrisome list

sgosline commented 3 years ago

To clarify step 3 - compute sample-to-sample correlation values using the function in the loadOrganoid.R script: https://github.com/sgosline/cNFOrganoidAnalysis/blob/deconv/loadOrganoidData.R#L209