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PNNL-CompBio / coderdata

Automation scripts and benchmark dataset package for cancer drug prediction deep learning models.
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broad_sanger experiments file not concatenatated correctly upon creation #161

Closed jjacobson95 closed 6 months ago

jjacobson95 commented 7 months ago

This is an old issue that appears to have slipped under the radar. But the headers are written into the data numerous times.

Screenshot 2024-04-30 at 9 32 36 AM
sgosline commented 7 months ago

can you just take this? the build script is now yours :)

jjacobson95 commented 7 months ago

Sure! I'll take #160 as well.

sgosline commented 6 months ago

This is likely happening in the fit_curve.py code.

jjacobson95 commented 6 months ago

I believe its from this line in the 04-drug_dosage_and_curves.py file. Each file has the same header and this is just doing a standard concat across all files.

sgosline commented 6 months ago

ahh, ok. i can fix that now then. tryin to pass the time while i validate the NCI60 update.