Parallelization of build_all.py

[jjacobson95]

Everything is working. Ready to Merge.

• All Docker Images are now built in parallel using docker compose.
• Samples and Drugs file generation should now run in parallel.
• All Omics and Experiments file generation should run in parallel once all samples and drugs are completed.
• CPTAC version updated to the latest ver. The 1.5.8 version was not working for me, so I updated to 1.5.11 and it worked - although sounds like this may not work for you, based on cptac issue #60?
• Push to Figshare is working. Required arguments: --figshare --version Push to PyPI is working. Required arguments: --pypy --version
• The version argument expects a value such as 0.1.28.
• high_mem argument for full parallelization. Exclude it for semi-parallelization.
• Schema checker integrated and each dataset runs in parallel.
• README.md file updated

In summary, this may be run on a high memory platform, fully validate, upload to figshare and and upload to pypi with the following commands:

export SYNAPSE_AUTH_TOKEN="..."
export PYPI_TOKEN="..."
export FIGSHARE_TOKEN="..."

python build/build_all.py --all --high_mem --pypi --figshare --version 0.1.29

Edit - Also manually updated all files needed to update github pages which is now live.

[jjacobson95]

@sgosline This should be ready to go. Full with with high_mem (and without) was successful. Latest HCMI changes haven't been tested yet, but that shouldn't impact this PR specifically.

This took ~16 hours from start to finish on a c5.9xlarge EC2 instance (36vCPUs, 72Gb Memory).

[jjacobson95]

One note, the build/docker/Dockerfile.upload file will have to be updated to remove this line after testing is complete. RUN git checkout docker-build-multi