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PNNL-CompBio / coderdata

Automation scripts and benchmark dataset package for cancer drug prediction deep learning models.
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Add in data from MPNST cell line drug screen #194

Open sgosline opened 2 months ago

sgosline commented 2 months ago

Belinda found this dataset: https://febs.onlinelibrary.wiley.com/doi/full/10.1002/1878-0261.12086 Drug screen of ~6 MPNST cell lines - pull drug response data from supp table 5: https://febs.onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2F1878-0261.12086&file=mol212086-sup-0010-TableS5.xlsx

and table 6: https://febs.onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2F1878-0261.12086&file=mol212086-sup-0011-TableS6.xlsx

omics data from cell lines? they have transcriptomics, RPPA, copy number - but where?

sgosline commented 1 month ago

Found data from arrays from the Ratner lab, but no sequencing to date. Currently only array data.