NCI60 Polars Version Error

PNNL-CompBio / coderdata

Automation scripts and benchmark dataset package for cancer drug prediction deep learning models.

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NCI60 Polars Version Error #238

Closed jjacobson95 closed 2 weeks ago

jjacobson95 commented 1 month ago

Mainly adding this to track, I'll this change in my branch right now.

Polars is unpinned in broad_sanger. I will pin it to an old version (0.19.17).

Error in polars latest (1.10.0):

ComputeError                              Traceback (most recent call last)
Cell In[5], line 1
----> 1 names = pl.read_csv(chemnames,ignore_errors=True)
...
ComputeError: invalid utf-8 sequence