Create a simulated dataset based on the Rieckmann data

PNNL-CompBio / decomprolute

A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.

MIT License

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Create a simulated dataset based on the Rieckmann data #119

Closed sgosline closed 3 years ago

sgosline commented 3 years ago

Francesca will create the framework to test a simulated dataset based on the Rieckmann proteomics data. This includes:

creation of a docker image that builds the simulated dataset and produces a 'true' deconvolution as well as a 'randomized' matrix
creation of a CWL script that runs tumor deconvolution on this data and computes statistics based on the randomized matrix.

sgosline commented 3 years ago

Update; @petraf01 has uploaded the files to a Box folder. Assigning to myself to create th edocker image and scripts to return the data in a format that can be used by the deconvolution algorithms.