verify datasets used for protein and mRNA

PNNL-CompBio / decomprolute

A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.

MIT License

15 stars 4 forks source link

verify datasets used for protein and mRNA #76

Closed sgosline closed 3 years ago

sgosline commented 3 years ago

Sara to reach out to Payne Lab to figure out which data are the most up-to-date. WashU for mRNA. For Proteomics - Michigan.

sgosline commented 3 years ago

Sent email to Sam 2021/02/15.

sgosline commented 3 years ago

His response:

 My students are building parsers for everything and I hope to have it all out by the end of the month. Plans are that it will be a separate sub-package used like so:
from cptac import pancan
en = pancan.Endometrial()
df = en.get_proteomics(source=”Broad”) # or “Michigan”